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Editing the Video
For AVI video files use glav from the mjpegtools package to select the portions of the avi file(s) you want to process later.
For already encoded mpeg2 files, use GOPchop to select the parts of the file you want to extract and work with. Using this method you can grab snippets of the movie to use as mini movies for the Chapter Selection menu or on the main menu itself. You can also remove the commercials in this manner.